MRG: update with misc animal genomes #3422
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## latest #3422 +/- ##
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Ready for review & merge @bluegenes @ccbaumler ! |
doc/databases.md
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| @@ -30,6 +30,20 @@ The databases do not need to be unpacked or prepared in any way after download. | |||
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| You can verify that they've been successfully downloaded (and view database properties such as `ksize` and `scaled`) with `sourmash sig summarize <output>`. | |||
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| ## Sketches for human and animal genomes | |||
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| These include k=21, k=31, and k=51, at a scaled of 1000. Each file is about 110 MB. | |||
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| These include k=21, k=31, and k=51, at a scaled of 1000. Each file is about 110 MB. | |
| These signature files are representative sketches of model organisms. There suggested usage is to identify and remove contamination from environmental sketches. These include k=21, k=31, and k=51, at a scaled of 1000. Each file is about 110 MB. |
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updated in dc9d435 with:
+These sketches are of the latest releases of a number of animal
+genomes. Among other uses, they can be used to detect host
+contamination in microbial metagenomes.
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+Each file includes sketches at k=21, k=31, and k=51, at a scaled of
+1000, and is about 110 MB.
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Also, would you like to add some of the more canonical organisms? Namely,
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No, I just want to merge ;). I've added these to #2717 so we don't lose the suggestion. But the pipeline I'm using doesn't do anything fancy and I don't want to piecemeal add new genomes (because it's work, and it's also error prone ;) until we automated the process more. |
Adds common hosts and also hg38.
Tackles #2717
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